PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00329g00939.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 694aa    MW: 77620.1 Da    PI: 5.827
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00329g00939.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.8e-06128148425
                               ---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                               ++C ff++ G+C  GdrC+F H
  Peaxi162Scf00329g00939.1 128 VPCIFFQQ-GFCLKGDRCPFFH 148
                               79******.***********88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9722857IPR000571Zinc finger, CCCH-type
SMARTSM003560.00232956IPR000571Zinc finger, CCCH-type
PfamPF156635.4E-112983No hitNo description
PROSITE profilePS5010310.4555985IPR000571Zinc finger, CCCH-type
SMARTSM003560.736184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807124151IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4125150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6126149IPR000571Zinc finger, CCCH-type
PfamPF146080.086129148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MVGPTPPQLQ IQPPSTVAAM SSAEEEAIKR NTDCVYFLAS PLTCKKGSEC EYRHSDVARL  60
NPRDCWYWLN GSCLNPKCGF RHPPLDGLLG AQVPTPTGSS VPPVSSVPPV ASVTPTPQVP  120
YASSKQGVPC IFFQQGFCLK GDRCPFFHAP ISVSNKAPPH PVSTASTEKT TLKKAFGGLE  180
KCVQVKKISP ANTWKSSDLP VQAQPVGKLG TPLSKNDAAF DENVLPPNSV VDVSHHRNRP  240
KIVPPTNGNP VSRSSRVQQS VGFDDHSIQN KDDDVSRELS PGFDVLVDDE LRGTDFYHGE  300
DQYGRNEGRN EYGIGADVDQ DMYHDVYGYE SHDRLQGRSG RVEHRASSER IQGQSAHLER  360
RRYGRAHSPE EVRESDLRHR LSKQKRVNGL RSVISHDYAS EKHVEGRGYQ SSRRDRQDSS  420
LTGGRLRGRI KLPSRSSSPT NGTDMRLDRE MDRARDRGRI SLERPQLFSQ QGRLRDRIKG  480
RVQEDLNNAG RNNSGPRLRR DISENNSDFT GPRRLAELKG RKTTGTNEQN ADEQQALGKR  540
KFQKRDDYQQ GGGDVSFEGP MPLQEILKRK RRSETGMTSD KSEGYQHERK DLGQKEDSDL  600
PSDEKNCHQE PASADDQSLL HHVANEVEAE EGMIEEDADD QDPEGHDQRD YDYEQVDGED  660
YNLDEGENAD AGEEYLDEDD DDDDFAKKMG VVFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759890.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A0V0ITN20.0A0A0V0ITN2_SOLCH; Putative zinc finger CCCH domain-containing protein 17-like
STRINGPGSC0003DMT4000805690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633